HL_8CKU_045

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8CKU|1|AA|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_045 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.1839

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8CKU|1|AA|G|2110
8CKU|1|AA|G|2111
8CKU|1|AA|U|2112
8CKU|1|AA|A|2113
8CKU|1|AA|C|2114

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain I

60S ribosomal protein L24-A