HL_8CKU_079
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 8CKU|1|CC|A|111, 8CKU|1|CC|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CKU_079 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.1353
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8CKU|1|CC|C|108
8CKU|1|CC|A|109
8CKU|1|CC|C|110
8CKU|1|CC|A|111
8CKU|1|CC|U|112
8CKU|1|CC|U|113
8CKU|1|CC|G|114
Current chains
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 60S ribosomal protein L25
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
Coloring options: