HL_8CKU_112

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8CKU|1|c|U|1398, 8CKU|1|c|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_112 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.3161

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8CKU|1|c|U|1396
8CKU|1|c|U|1397
8CKU|1|c|U|1398
8CKU|1|c|C|1399
8CKU|1|c|A|1400
8CKU|1|c|A|1401
8CKU|1|c|G|1402

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain t

40S ribosomal protein S17-A