HL_8CMJ_034

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUGAUUUUAUGCAGG

Length

15 nucleotides

Bulged bases

8CMJ|1|AA|U|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_034 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3518

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CMJ|1|AA|C|1563
8CMJ|1|AA|U|1564
8CMJ|1|AA|G|1565
8CMJ|1|AA|A|1566
8CMJ|1|AA|U|1567
8CMJ|1|AA|U|1568
8CMJ|1|AA|U|1569
8CMJ|1|AA|U|1570
8CMJ|1|AA|A|1571
8CMJ|1|AA|U|1572
8CMJ|1|AA|G|1573
8CMJ|1|AA|C|1574
8CMJ|1|AA|A|1575
8CMJ|1|AA|G|1576
8CMJ|1|AA|G|1577

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A