HL_8CMJ_048

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

A(A2M)GAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_048 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3739

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8CMJ|1|AA|A|2219
8CMJ|1|AA|A2M|2220
8CMJ|1|AA|G|2221
8CMJ|1|AA|A|2222
8CMJ|1|AA|A|2223
8CMJ|1|AA|A|2224
8CMJ|1|AA|U|2225
8CMJ|1|AA|U|2226

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L36-A

Chain a

60S ribosomal protein L42-A