HL_8CMJ_054

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8CMJ|1|AA|U|2571, 8CMJ|1|AA|C|2572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_054 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2541

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8CMJ|1|AA|C|2568
8CMJ|1|AA|A|2569
8CMJ|1|AA|U|2570
8CMJ|1|AA|U|2571
8CMJ|1|AA|C|2572
8CMJ|1|AA|G|2573

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L27-A