HL_8CMJ_082

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8CMJ|1|c|G|246, 8CMJ|1|c|A|247, 8CMJ|1|c|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_082 not in the Motif Atlas

Geometric match to HL_2Y9H_004

Geometric discrepancy: 0.276

The information below is about HL_2Y9H_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97696.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

8CMJ|1|c|G|243
8CMJ|1|c|A|244
8CMJ|1|c|U|245
8CMJ|1|c|G|246
8CMJ|1|c|A|247
8CMJ|1|c|U|248
8CMJ|1|c|U|249
8CMJ|1|c|C|250

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain o

40S ribosomal protein S11-A