HL_8CMJ_105

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8CMJ|1|c|U|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_105 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.309

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CMJ|1|c|U|1396
8CMJ|1|c|U|1397
8CMJ|1|c|U|1398
8CMJ|1|c|C|1399
8CMJ|1|c|A|1400
8CMJ|1|c|A|1401
8CMJ|1|c|G|1402

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 4

40S ribosomal protein S28-A

Chain t

40S ribosomal protein S17-A