HL_8CRE_097

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8CRE|1|AS|U|875, 8CRE|1|AS|A|879, 8CRE|1|AS|A|880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_097 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0426

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8CRE|1|AS|A|872
8CRE|1|AS|C|873
8CRE|1|AS|G|874
8CRE|1|AS|U|875
8CRE|1|AS|G|876
8CRE|1|AS|C|877
8CRE|1|AS|A|878
8CRE|1|AS|A|879
8CRE|1|AS|A|880
8CRE|1|AS|U|881

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BK

Ribosomal protein L22

Chain CE

60S ribosomal protein L37-B