HL_8CRE_172

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8CRE|1|B|G|750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_172 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.0717

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8CRE|1|B|U|749
8CRE|1|B|G|750
8CRE|1|B|U|751
8CRE|1|B|U|752
8CRE|1|B|C|753
8CRE|1|B|A|754
8CRE|1|B|A|755
8CRE|1|B|A|756
8CRE|1|B|G|757

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S4

Chain a

40S ribosomal protein S24