HL_8CRX_006

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGUAGUGGC

Length

9 nucleotides

Bulged bases

8CRX|1|A|G|268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRX_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1281

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8CRX|1|A|G|261
8CRX|1|A|G|262
8CRX|1|A|U|263
8CRX|1|A|A|264
8CRX|1|A|G|265
8CRX|1|A|U|266
8CRX|1|A|G|267
8CRX|1|A|G|268
8CRX|1|A|C|269

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20