HL_8CRX_024

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8CRX|1|A|G|1079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRX_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0885

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

8CRX|1|A|G|1074
8CRX|1|A|U|1075
8CRX|1|A|U|1076
8CRX|1|A|A|1077
8CRX|1|A|A|1078
8CRX|1|A|G|1079
8CRX|1|A|U|1080
8CRX|1|A|C|1081

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain B

30S ribosomal protein S2

Chain I

30S ribosomal protein S7