HL_8CRX_047

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

8CRX|1|a|G|414, 8CRX|1|a|A|415, 8CRX|1|a|G|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRX_047 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0914

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8CRX|1|a|G|412
8CRX|1|a|U|413
8CRX|1|a|G|414
8CRX|1|a|A|415
8CRX|1|a|G|416
8CRX|1|a|A|417
8CRX|1|a|G|418
8CRX|1|a|U|419
8CRX|1|a|C|420

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24