HL_8CRX_097

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGGAGUCG

Length

8 nucleotides

Bulged bases

8CRX|1|a|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRX_097 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.2831

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8CRX|1|a|U|2710
8CRX|1|a|G|2711
8CRX|1|a|G|2712
8CRX|1|a|A|2713
8CRX|1|a|G|2714
8CRX|1|a|U|2715
8CRX|1|a|C|2716
8CRX|1|a|G|2717

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6