HL_8CSP_003

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CACCACG

Length

7 nucleotides

Bulged bases

8CSP|1|A|C|736

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSP_003 not in the Motif Atlas

Geometric match to HL_3NVI_002

Geometric discrepancy: 0.3005

The information below is about HL_3NVI_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8CSP|1|A|C|734
8CSP|1|A|A|735
8CSP|1|A|C|736
8CSP|1|A|C|737
8CSP|1|A|A|738
8CSP|1|A|C|739
8CSP|1|A|G|740

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain M

28S ribosomal protein S16, mitochondrial

Chain U

28S ribosomal protein S26, mitochondrial