HL_8CSP_019

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGGAAA

Length

6 nucleotides

Bulged bases

8CSP|1|A|G|1581, 8CSP|1|A|G|1582, 8CSP|1|A|A|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSP_019 not in the Motif Atlas

Homologous match to HL_5J7L_031

Geometric discrepancy: 0.4574

The information below is about HL_5J7L_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8CSP|1|A|U|1580
8CSP|1|A|G|1581
8CSP|1|A|G|1582
8CSP|1|A|A|1583
8CSP|1|A|A|1584
8CSP|1|A|A|1585

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial