HL_8CSS_011

3D structure

PDB id

8CSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8CSS|1|A|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSS_011 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1363

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8CSS|1|A|G|1074
8CSS|1|A|A|1075
8CSS|1|A|U|1076
8CSS|1|A|U|1077
8CSS|1|A|A|1078
8CSS|1|A|G|1079
8CSS|1|A|A|1080
8CSS|1|A|U|1081
8CSS|1|A|A|1082
8CSS|1|A|C|1083
8CSS|1|A|C|1084

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 6

Putative ribosome-binding factor A, mitochondrial

Chain I

28S ribosomal protein S11, mitochondrial