HL_8CVJ_176

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8CVJ|1|2A|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVJ_176 not in the Motif Atlas

Geometric match to HL_7RQB_066

Geometric discrepancy: 0.0916

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8CVJ|1|2A|C|2745
8CVJ|1|2A|U|2746
8CVJ|1|2A|G|2747
8CVJ|1|2A|A|2748
8CVJ|1|2A|A|2749
8CVJ|1|2A|A|2750
8CVJ|1|2A|G|2751
8CVJ|1|2A|C|2752
8CVJ|1|2A|A|2753
8CVJ|1|2A|U|2754
8CVJ|1|2A|C|2755
8CVJ|1|2A|U|2756
8CVJ|1|2A|A|2757
8CVJ|1|2A|A|2758
8CVJ|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6