HL_8CVK_177

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8CVK|1|2A|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVK_177 not in the Motif Atlas

Geometric match to HL_7RQB_066

Geometric discrepancy: 0.1076

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8CVK|1|2A|C|2745
8CVK|1|2A|U|2746
8CVK|1|2A|G|2747
8CVK|1|2A|A|2748
8CVK|1|2A|A|2749
8CVK|1|2A|A|2750
8CVK|1|2A|G|2751
8CVK|1|2A|C|2752
8CVK|1|2A|A|2753
8CVK|1|2A|U|2754
8CVK|1|2A|C|2755
8CVK|1|2A|U|2756
8CVK|1|2A|A|2757
8CVK|1|2A|A|2758
8CVK|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13