3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
8CVK|1|2a|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_207 not in the Motif Atlas
Homologous match to HL_5J7L_024
Geometric discrepancy: 0.1125
The information below is about HL_5J7L_024
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.5
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8CVK|1|2a|G|1089
8CVK|1|2a|U|1090
8CVK|1|2a|U|1091
8CVK|1|2a|A|1092
8CVK|1|2a|A|1093
8CVK|1|2a|G|1094
8CVK|1|2a|U|1095
8CVK|1|2a|C|1096

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2b
30S ribosomal protein S2
Chain 2g
30S ribosomal protein S7

Coloring options:


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