HL_8CVM_016
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUGAGAGUC
- Length
- 9 nucleotides
- Bulged bases
- 8CVM|1|a|G|414, 8CVM|1|a|A|415, 8CVM|1|a|G|416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVM_016 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.0914
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
8CVM|1|a|G|412
8CVM|1|a|U|413
8CVM|1|a|G|414
8CVM|1|a|A|415
8CVM|1|a|G|416
8CVM|1|a|A|417
8CVM|1|a|G|418
8CVM|1|a|U|419
8CVM|1|a|C|420
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain t
- 50S ribosomal protein L24
Coloring options: