HL_8CVM_053

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

8CVM|1|a|A|2096, 8CVM|1|a|C|2097, 8CVM|1|a|A|2099

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_053 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.2059

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8CVM|1|a|G|2093
8CVM|1|a|PSU|2094
8CVM|1|a|A|2095
8CVM|1|a|A|2096
8CVM|1|a|C|2097
8CVM|1|a|3TD|2098
8CVM|1|a|A|2099
8CVM|1|a|PSU|2100
8CVM|1|a|A|2101
8CVM|1|a|A|2102
8CVM|1|a|C|2103

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA