HL_8CVM_055

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

8CVM|1|a|A|2213, 8CVM|1|a|A|2214, 8CVM|1|a|G|2215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_055 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

8CVM|1|a|G|2210
8CVM|1|a|U|2211
8CVM|1|a|A|2212
8CVM|1|a|A|2213
8CVM|1|a|A|2214
8CVM|1|a|G|2215
8CVM|1|a|A|2216
8CVM|1|a|U|2217
8CVM|1|a|G|2218
8CVM|1|a|C|2219

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein bL37

Chain d

50S ribosomal protein L3

Chain z

50S ribosomal protein L32