HL_8CVM_057

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGAUCC

Length

7 nucleotides

Bulged bases

8CVM|1|a|G|2393, 8CVM|1|a|U|2395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_057 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1028

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8CVM|1|a|G|2391
8CVM|1|a|U|2392
8CVM|1|a|G|2393
8CVM|1|a|A|2394
8CVM|1|a|U|2395
8CVM|1|a|C|2396
8CVM|1|a|C|2397

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28