HL_8CVM_061
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGUAAGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVM_061 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.1102
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
8CVM|1|a|U|2506
8CVM|1|a|G|2507
8CVM|1|a|U|2508
8CVM|1|a|A|2509
8CVM|1|a|A|2510
8CVM|1|a|G|2511
8CVM|1|a|U|2512
8CVM|1|a|G|2513
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain l
- 50S ribosomal protein L16
- Chain v
- 50S ribosomal protein L27
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