HL_8CVO_007

3D structure

PDB id

8CVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVO_007 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1614

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

8CVO|1|A|U|1251
8CVO|1|A|G|1252
8CVO|1|A|U|1253
8CVO|1|A|G|1254
8CVO|1|A|A|1255
8CVO|1|A|G|1256

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13

Chain U

30S ribosomal protein S19