HL_8CWO_005

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GUUUCGGC

Length

8 nucleotides

Bulged bases

8CWO|1|A|U|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CWO_005 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.3542

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8CWO|1|A|G|214
8CWO|1|A|U|215
8CWO|1|A|U|216
8CWO|1|A|U|217
8CWO|1|A|C|218
8CWO|1|A|G|219
8CWO|1|A|G|220
8CWO|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains