HL_8CWO_006

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGUAGUGGC

Length

9 nucleotides

Bulged bases

8CWO|1|A|G|268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CWO_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1281

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8CWO|1|A|G|261
8CWO|1|A|G|262
8CWO|1|A|U|263
8CWO|1|A|A|264
8CWO|1|A|G|265
8CWO|1|A|U|266
8CWO|1|A|G|267
8CWO|1|A|G|268
8CWO|1|A|C|269

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20