HL_8CWO_014

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

8CWO|1|A|U|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CWO_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0958

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_27656.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8CWO|1|A|G|599
8CWO|1|A|C|600
8CWO|1|A|U|601
8CWO|1|A|U|602
8CWO|1|A|A|603
8CWO|1|A|A|604
8CWO|1|A|C|605

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16