HL_8CWO_017

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GCUUAGAUACC

Length

11 nucleotides

Bulged bases

8CWO|1|A|U|775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CWO_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1063

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8CWO|1|A|G|768
8CWO|1|A|C|769
8CWO|1|A|U|770
8CWO|1|A|U|771
8CWO|1|A|A|772
8CWO|1|A|G|773
8CWO|1|A|A|774
8CWO|1|A|U|775
8CWO|1|A|A|776
8CWO|1|A|C|777
8CWO|1|A|C|778

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain Y

mRNA