HL_8E33_012

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8E33|1|I|G|386, 8E33|1|I|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E33_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0909

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8E33|1|I|A|382
8E33|1|I|C|383
8E33|1|I|A|384
8E33|1|I|C|385
8E33|1|I|G|386
8E33|1|I|U|387
8E33|1|I|G|388
8E33|1|I|G|389
8E33|1|I|U|390
8E33|1|I|A|391
8E33|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains