HL_8E3L_012

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8E3L|1|I|G|386, 8E3L|1|I|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3L_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1275

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8E3L|1|I|A|382
8E3L|1|I|C|383
8E3L|1|I|A|384
8E3L|1|I|C|385
8E3L|1|I|G|386
8E3L|1|I|U|387
8E3L|1|I|G|388
8E3L|1|I|G|389
8E3L|1|I|U|390
8E3L|1|I|A|391
8E3L|1|I|U|392

Current chains

Chain I

50S ribosomal RNA

Nearby chains