HL_8E3L_071

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGGUAACACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3L_071 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3218

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8E3L|1|I|G|711
8E3L|1|I|G|712
8E3L|1|I|G|713
8E3L|1|I|U|714
8E3L|1|I|A|715
8E3L|1|I|A|716
8E3L|1|I|C|717
8E3L|1|I|A|718
8E3L|1|I|C|719
8E3L|1|I|U|720

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2