HL_8E41_012

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8E41|1|I|G|386, 8E41|1|I|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E41_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0794

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8E41|1|I|A|382
8E41|1|I|C|383
8E41|1|I|A|384
8E41|1|I|C|385
8E41|1|I|G|386
8E41|1|I|U|387
8E41|1|I|G|388
8E41|1|I|G|389
8E41|1|I|U|390
8E41|1|I|A|391
8E41|1|I|U|392

Current chains

Chain I

50S ribosomal RNA

Nearby chains