HL_8E42_028

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E42_028 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.369

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8E42|1|I|G|1063
8E42|1|I|C|1064
8E42|1|I|U|1065
8E42|1|I|U|1066
8E42|1|I|A|1067
8E42|1|I|G|1068
8E42|1|I|A|1069
8E42|1|I|A|1070
8E42|1|I|G|1071
8E42|1|I|C|1072
8E42|1|I|A|1073
8E42|1|I|G|1074
8E42|1|I|C|1075

Current chains

Chain I

50S ribosomal RNA

Nearby chains