HL_8E46_012

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8E46|1|I|G|386, 8E46|1|I|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E46_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1231

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8E46|1|I|A|382
8E46|1|I|C|383
8E46|1|I|A|384
8E46|1|I|C|385
8E46|1|I|G|386
8E46|1|I|U|387
8E46|1|I|G|388
8E46|1|I|G|389
8E46|1|I|U|390
8E46|1|I|A|391
8E46|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains