HL_8E47_066

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8E47|1|I|G|2751, 8E47|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E47_066 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1303

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8E47|1|I|C|2745
8E47|1|I|U|2746
8E47|1|I|G|2747
8E47|1|I|A|2748
8E47|1|I|A|2749
8E47|1|I|A|2750
8E47|1|I|G|2751
8E47|1|I|C|2752
8E47|1|I|A|2753
8E47|1|I|U|2754
8E47|1|I|C|2755
8E47|1|I|U|2756
8E47|1|I|A|2757
8E47|1|I|A|2758
8E47|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13