HL_8E5T_006

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E5T_006 not in the Motif Atlas

Geometric match to HL_8C3A_018

Geometric discrepancy: 0.3377

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8E5T|1|1|U|278
8E5T|1|1|U|279
8E5T|1|1|U|280
8E5T|1|1|U|286
8E5T|1|1|G|287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain b

Ribosome biogenesis protein BRX1