HL_8E5T_019

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAUUGCAGAAUUCCGUGAA

Length

21 nucleotides

Bulged bases

8E5T|1|2|U|82, 8E5T|1|2|U|86

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E5T_019 not in the Motif Atlas

Homologous match to HL_8C3A_230

Geometric discrepancy: 0.4187

The information below is about HL_8C3A_230

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08513.2

Basepair signature

cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8E5T|1|2|U|69
8E5T|1|2|G|70
8E5T|1|2|A|71
8E5T|1|2|A|72
8E5T|1|2|U|73
8E5T|1|2|U|74
8E5T|1|2|G|75
8E5T|1|2|C|76
8E5T|1|2|A|77
8E5T|1|2|G|78
8E5T|1|2|A|79
8E5T|1|2|A|80
8E5T|1|2|U|81
8E5T|1|2|U|82
8E5T|1|2|C|83
8E5T|1|2|C|84
8E5T|1|2|G|85
8E5T|1|2|U|86
8E5T|1|2|G|87
8E5T|1|2|A|88
8E5T|1|2|A|89

Current chains

Chain 2

5.8S ribosomal RNA

Nearby chains