3D structure

PDB id
8E5T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CAUUCUG
Length
7 nucleotides
Bulged bases
8E5T|1|3|C|15
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8E5T_021 not in the Motif Atlas
Geometric match to HL_8KAH_003
Geometric discrepancy: 0.267
The information below is about HL_8KAH_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89457.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
2

Unit IDs

8E5T|1|3|C|11
8E5T|1|3|A|12
8E5T|1|3|U|13
8E5T|1|3|U|14
8E5T|1|3|C|15
8E5T|1|3|U|16
8E5T|1|3|G|17

Current chains

Chain 3
ITS2 ribosomal RNA

Nearby chains

Chain K
Proteasome-interacting protein CIC1

Coloring options:


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