HL_8EIU_049

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8EIU|1|a|G|386, 8EIU|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EIU_049 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0641

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EIU|1|a|A|382
8EIU|1|a|C|383
8EIU|1|a|A|384
8EIU|1|a|C|385
8EIU|1|a|G|386
8EIU|1|a|U|387
8EIU|1|a|G|388
8EIU|1|a|G|389
8EIU|1|a|U|390
8EIU|1|a|A|391
8EIU|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28