3D structure

PDB id
8EIU (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with A-loop mutations U2554C and U2555C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
8EIU|1|a|A|751, 8EIU|1|a|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EIU_059 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.0626
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

8EIU|1|a|U|744
8EIU|1|a|1MG|745
8EIU|1|a|PSU|746
8EIU|1|a|5MU|747
8EIU|1|a|G|748
8EIU|1|a|A|749
8EIU|1|a|A|750
8EIU|1|a|A|751
8EIU|1|a|A|752
8EIU|1|a|A|753

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain d
50S ribosomal protein L3
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1666 s