HL_8EKC_005

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKC_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1307

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8EKC|1|A|U|158
8EKC|1|A|G|159
8EKC|1|A|A|160
8EKC|1|A|A|161
8EKC|1|A|U|162
8EKC|1|A|C|163
8EKC|1|A|C|164
8EKC|1|A|A|165
8EKC|1|A|U|166
8EKC|1|A|A|167
8EKC|1|A|G|168

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28