HL_8EKC_012

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8EKC|1|A|G|386, 8EKC|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKC_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1105

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EKC|1|A|A|382
8EKC|1|A|C|383
8EKC|1|A|A|384
8EKC|1|A|C|385
8EKC|1|A|G|386
8EKC|1|A|U|387
8EKC|1|A|G|388
8EKC|1|A|G|389
8EKC|1|A|U|390
8EKC|1|A|A|391
8EKC|1|A|U|392

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L28