3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
8EMM|1|a|A|751, 8EMM|1|a|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_059 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.0425
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

8EMM|1|a|U|744
8EMM|1|a|1MG|745
8EMM|1|a|PSU|746
8EMM|1|a|5MU|747
8EMM|1|a|G|748
8EMM|1|a|A|749
8EMM|1|a|A|750
8EMM|1|a|A|751
8EMM|1|a|A|752
8EMM|1|a|A|753

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain d
50S ribosomal protein L3
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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