HL_8ETI_005

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

8ETI|1|1|G|217, 8ETI|1|1|A|218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_005 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1477

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8ETI|1|1|C|215
8ETI|1|1|A|216
8ETI|1|1|G|217
8ETI|1|1|A|218
8ETI|1|1|G|219

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain C

60S ribosomal protein L4-B

Chain Y

60S ribosomal protein L26