HL_8ETI_006
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAGAACC
- Length
- 9 nucleotides
- Bulged bases
- 8ETI|1|1|G|225, 8ETI|1|1|A|226, 8ETI|1|1|G|227
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ETI_006 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1102
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8ETI|1|1|G|223
8ETI|1|1|U|224
8ETI|1|1|G|225
8ETI|1|1|A|226
8ETI|1|1|G|227
8ETI|1|1|A|228
8ETI|1|1|A|229
8ETI|1|1|C|230
8ETI|1|1|C|231
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 3
- Protein mak16
- Chain C
- 60S ribosomal protein L4-B
- Chain Y
- 60S ribosomal protein L26
Coloring options: