HL_8ETI_018

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

8ETI|1|1|A|1181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_018 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.4814

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8ETI|1|1|G|1179
8ETI|1|1|G|1180
8ETI|1|1|A|1181
8ETI|1|1|U|1182
8ETI|1|1|G|1183
8ETI|1|1|A|1184
8ETI|1|1|A|1185
8ETI|1|1|C|1186

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain F

60S ribosomal protein L7-B

Chain e

60S ribosomal protein L32-A

Chain f

60S ribosomal protein L33-B