HL_8ETI_021
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUAGCUUUGAGAAG
- Length
- 14 nucleotides
- Bulged bases
- 8ETI|1|1|A|1380, 8ETI|1|1|C|1382, 8ETI|1|1|G|1386, 8ETI|1|1|G|1388, 8ETI|1|1|A|1390
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ETI_021 not in the Motif Atlas
- Homologous match to HL_8C3A_029
- Geometric discrepancy: 0.5629
- The information below is about HL_8C3A_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13577.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8ETI|1|1|U|1378
8ETI|1|1|U|1379
8ETI|1|1|A|1380
8ETI|1|1|G|1381
8ETI|1|1|C|1382
8ETI|1|1|U|1383
8ETI|1|1|U|1384
8ETI|1|1|U|1385
8ETI|1|1|G|1386
8ETI|1|1|A|1387
8ETI|1|1|G|1388
8ETI|1|1|A|1389
8ETI|1|1|A|1390
8ETI|1|1|G|1391
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain 3
- Protein mak16
- Chain 4
- Ribosomal RNA-processing protein 1 homolog
- Chain C
- 60S ribosomal protein L4-B
- Chain E
- 60S ribosomal protein L6
- Chain F
- 60S ribosomal protein L7-B
- Chain Q
- 60S ribosomal protein L18-A
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