HL_8ETI_025

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8ETI|1|1|G|2993

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_025 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.2196

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8ETI|1|1|A|2992
8ETI|1|1|G|2993
8ETI|1|1|C|2994
8ETI|1|1|A|2995
8ETI|1|1|G|2996
8ETI|1|1|A|2997
8ETI|1|1|A|2998
8ETI|1|1|U|2999

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain b

Probable nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein nsa2